Molecular Dynamics and Analysis using BRIDGE
Thursday, 6 December 2018 -
08:00
Monday, 3 December 2018
Tuesday, 4 December 2018
Wednesday, 5 December 2018
Thursday, 6 December 2018
08:00
Registration
Registration
08:00 - 09:00
09:00
BRIDGE Overview: why MD and the value of this platform
BRIDGE Overview: why MD and the value of this platform
09:00 - 09:15
09:15
Logging into the platform
Logging into the platform
09:15 - 09:30
09:30
Setup of an example protein (cellulase) with CHARMM-GUI
Setup of an example protein (cellulase) with CHARMM-GUI
09:30 - 09:50
09:50
Uploading datasets to BRIDGE
Uploading datasets to BRIDGE
09:50 - 10:05
10:05
Running the MD workflow (Hands on)
Running the MD workflow (Hands on)
10:05 - 10:30
10:30
Morning break
Morning break
10:30 - 11:00
11:00
Workflows in BRIDGE: Explanation of the steps of an MD workflow
Workflows in BRIDGE: Explanation of the steps of an MD workflow
11:00 - 11:20
11:20
Creating your own history and workflow
Creating your own history and workflow
11:20 - 11:40
11:40
Analysis: Run an analysis workflow and analyse data
Analysis: Run an analysis workflow and analyse data
11:40 - 12:00
12:00
Sharing data with collaborators
Sharing data with collaborators
12:00 - 12:15
12:15
Analysis: complete the workflow (Hands on)
Analysis: complete the workflow (Hands on)
12:15 - 12:30
12:30
Lunch
Lunch
12:30 - 13:30
13:30
Resources and Support for Galaxy and BRIDGE
Resources and Support for Galaxy and BRIDGE
13:30 - 13:50
13:50
Bring your own data – let’s see if this can work for you (Interactive)
Bring your own data – let’s see if this can work for you (Interactive)
13:50 - 15:00
15:00
Afternoon break
Afternoon break
15:00 - 15:30
15:30
Q&A and testing with your own data sets (Interactive)
Q&A and testing with your own data sets (Interactive)
15:30 - 17:00
17:00
End of Workshop
End of Workshop
17:00 - 17:05